MAGeCK-VISPR 2: Pipeline Configuration

MAGeCK-VISPR is a workflow that analyzes visualizes and allows users to interact with data from CRISPRCAS9 screens.
This tutorial demonstrates how to configure the pipeline using demo data available on our bitbucket page. Links: MAGeCK-VISPR documentation example data detailed instructions: Snakemake documentation: MAGeCK design matrix information: Lengthy Terminal Commands: tar xvfj Downloadsesc.testdata.step2.tar.bz2 less Downloadsesc-testesc-testdatadesignmatrix.txt Paper: Wei Li Johannes Köster et al.
Quality Control Modeling and Visualization of CRISPR Screens with MAGeCK-VISPR.
Submitted. 2015 Liu Lab

Источник: rutube.ru